Publications

The best way to know more about our research is to read our publications!

Our Core Values

  • Profession
  • Innovation
  • Quality
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  • Bravery
  • Ethics

    2023

    • Wei-Yu Chen, Jer-Horng Wu*, Bing Nan Wang. Intermittent oxygen supply facilitates code gradation of trichloroethane and toluene by anaerobic consortia. Environmental Science and Technology 2023, 57, 28, 10252-10262. DOI:  10.1021/acs.est.3c02481
    • Jiung-Wen Chen​, Chao-Jen Shih​, Li-Wha Wu​, Yen-Chi Wu​, Wei-Fan Chiang​, Yuh-Ling Chen​, Jer-Horng Wu*. Phocaeicola oris sp. nov., an anaerobic bacterium isolated from the saliva of a patient with oral squamous cell carcinoma. International Journal of Systematic and Evolutionary Microbiology 73(2) DOI:  10.1099/ijsem.0.005703
    • Yung-Hsien Shao, Yu-Wei Wu, Muhammad Naufal, Jer-Horng Wu*. Genome-centered metagenomics illuminates adaptations of core members to a partial Nitritation–Anammox bioreactor under periodic microaeration. Frontiers in microbiology 2023, 14  https://doi.org/10.3389/fmicb.2023.1046769

    2022

    • Chen, Nai-Tzu, Lai-Man Tam, Jer-Horng Wu, Ngok-Song Cheong, Chuan-Yao Lin, Chun-Chieh Tseng, and Huey-Jen Su. 2022. Changes in Ambient Bacterial Community in Northern Taiwan during Long-Range Transport: Asian Dust Storm and Frontal Pollution. Atmosphere 13, no. 5: 841. https://doi.org/10.3390/atmos13050841
    • Satoru Suzuki, Aya Kadoya, Nagi Masuda, Yuta Sugimoto, Hideshige Takada, Kaoruko Mizukawa, Ayaka Takei, Hsin-Yiu Chou, Jer-Horng Wu. Macrolide resistance genes and mobile genetic elements in waterways from pig farms to the sea in Taiwan. Journal of Global Antimicrobial Resistance, 29, 360-370. https://doi.org/10.1016/j.jgar.2022.04.024
    • Magdaléna Rusková, Mária Bučková, Adam Achs, Andrea Puškárová, Jer-Horng Wu, Tomáš Kuchta, Zdeno Šubr, Domenico Pangallo. Useful molecular tools for facing next pandemic events: Effective sample preparation and improved RT-PCR for highly sensitive detection of SARS-CoV-2 in wastewater environment. International Journal of Hygiene and Environmental Health, 245, 114017. https://doi.org/10.1016/j.ijheh.2022.114017
    • Muhammad Naufal, Jer-Horng Wu*, and Yung-Hsien Shao. Glutamate Enhances Osmoadaptation of Anammox Bacteria under High Salinity: Genomic Analysis and Experimental Evidence. Environmental Science & Technology 2022 56 (16), 11310-11322 https://doi.org/10.1021/acs.est.2c01104
    • Chen, Y.L., Huang, K.C., Wu, J.H., Liu, T., Chen, J.W., Xie, J.Y., Chen, M.Y., Wu, L.W., Tung, C.L. (2022). Microbiome dysbiosis inhibits carcinogen-induced murine oral tumorigenesis. Journal of Cancer, 13(10), 3051-3060. https://doi.org/10.7150/jca.75947.

    2021

    • Yung-Hsien Shao and Jer-Horng Wu*. Comammox Nitrospira Species Dominate in an Efficient Partial Nitrification−Anammox Bioreactor for Treating Ammonium at Low Loadings. Environmental Science&Technology, 55(3), 2087-2098. https://pubs.acs.org/doi/pdf/10.1021/acs.est.0c05777
    • Sheng-Fu Chiu, Chung-Han Ho, Yi-Chen Chen, Li-Wha Wu, Yuh-Ling Chen, Jer-Horng Wu, Wei-Sheng Wu, Hui-Kun Hung, Wei-Fan Chiang. Malignant transformation of oral potentially malignant disorders in Taiwan: An observational nationwide population database study. Medicine, 100(9): e24934. https://pubmed.ncbi.nlm.nih.gov/33655959/
    • J.H. Wu, J.W. Chen, M.Y. Chen, and Y.L Chen. Response to the Letter to the Editor: “Carcinogenesis of Male Oral Submucous Fibrosis Alters Salivary Microbiomes”. Journal of Dental Research. doi: 10.1177/00220345211000256. https://journals.sagepub.com/doi/pdf/10.1177/00220345211000256
    • Jiung-Wen Chen, Jer-Horng Wu*, Wei-Fan Chiang, Yuh-Ling Chen, Wei-Sheng Wu and Li-Wha Wu*. Taxonomic and Functional Dysregulation in Salivary Microbiomes During Oral Carcinogenesis.Frontiers in Cellular and Infection Microbiology. DOI: 10.3389/fcimb.2021.663068 
      https://reurl.cc/vggedl

    2020

    2019

    • Jer-Horng Wu, Wei-Yu Chen, Hung-Chih Kuo, Yun-MingLi. Redox fluctuations shape the soil microbiome in the hypoxic bioremediation of octachlorinated dibenzodioxin- and dibenzofuran-contaminated soil. Environmental Pollution, 248,50615. https://www.sciencedirect.com/science/article/pii/S0269749118349303
    • Matej Planý, Marianna Czolderová, Lucia Kraková, Andrea Puškárová, Mária Bučková, Katarína Šoltys, Jaroslav Budiš, Tomáš Szemes, Tomáš Mackulak, Jer-Horng Wu, Domenico Pangallo. Biogas production: evaluation of the influence of K2FeO4 pretreatment of maple leaves (Acer platanoides) on microbial consortia composition. Bioprocess and Biosystems Engineering, 42(7) 1151–1163. https://link.springer.com/article/10.1007/s00449-019-02112-x

    2018

    • Weina Yu, Jer-Horng Wu, Jinjie Zhang, Wen Yang, Jiong Chen and Jinbo Xiong. A meta-analysis reveals universal gut bacterial signatures for diagnosing the incidence of shrimp disease. FEMS Microbiology Ecology, 94(10):1-10. https://academic.oup.com/femsec/article/94/10/fiy147/5066164
    • Wei Yu Chen, Lucia Kraková, Jer Horng Wu, Domenico Pangallo, Lenka Jeszeová, Bing Liu, Hidenari Yasui. Community and proteomic analyses of anaerobic consortia converting tetramethylammonium to methane. Archaea, 2017 Article ID 2170535  https://www.hindawi.com/journals/archaea/2017/2170535/

    2017

    • Yuta Sugimoto, Satoru Suzuki, Lisa Nonaka, Chanchai Boonla, Nop Sukpanyatham, Hsin-Yiu Chou, Jer-Horng Wu. The novel mef (C)– mph (G) macrolide resistance genes are conveyed in the environment on various vectors. Journal of global antimicrobial resistance, 10:47-53. https://www.sciencedirect.com/science/article/abs/pii/S2213716517300814?via%3Dihub
    • Wei-Yu Chen, Tze Hann Ng, Jer-Horng Wu, Jiung-Wen Chen, Han-Ching Wang. Microbiome Dynamics in a Shrimp Grow-out Pond with Possible Outbreak of Acute Hepatopancreatic Necrosis Disease. Scientific Reports, 7:9395.  https://www.nature.com/articles/s41598-017-09923-6
    • Bing Liu, Kohei Yoshinaga, Jer-Horng Wu, Wei-Yu Chen, Mitsuharu Terashima, Rajeev Goel, Domenico Pangallo, Hidenari Yasui. Kinetic analysis of anaerobic biological degradation of tetramethylammonium hydroxide (TMAH) in the suspended sludge system at ambient temperature. Biochemical Engineering Journal, 114:42-49.
      https://www.mdpi.com/2076-3417/9/21/4578/htm

    2016

    2014

    2013

    • Jer-Horng Wu, Hui-Ping Chuang, Mao-Hsuan Hsu, Wei-Yu Chen. Multiplexed Relative Abundance Analysis of Methanogens in Anaerobic Digestion Systems Using a Hierarchical Oligonucleotide Primer Extension Approach. Applied and Environmental Microbiology, 79(24), 7598-7609. https://aem.asm.org/content/79/24/7598
    • Wei-Yu Chen, Jer-Horng Wu, Yong-Yu Lin, Hung-Jun Huang, Juu-En Chang. Bioremediation potential of soil contaminated with highly substituted polychlorinated dibenzo-p-dioxins and dibenzofurans: Microcosm study and microbial community analysis. Journal of Hazardous Materials, 261, 351-61. https://www.sciencedirect.com/science/article/pii/S0304389413005189?via%3Dihub

    2012

    • Jer-Horng Wu, Feng-Yau Wu, Hui-Ping Chuang, Wei-Yu Chen, Hung-Jen Huang, Shu-Hui Chen, Wen-Tso Liu. Community and Proteomic Analysis of Methanogenic Consortia Degrading Terephthalate. Applied and Environmental Microbiology, 79(1), 105-112. https://aem.asm.org/content/aem/79/1/105.full.pdf

    2010

    • Chyuan-Ying Chang, Hsin-Hsin Tung, I-Cheng Tseng, Jer-Horng Wu, Yi-Fen Liu, Huei-Ming Lin. Dynamics of methanotrophic communities in tropical alkaline landfill upland soil. Applied Soil Ecology, 46(2), 192-199. https://aem.asm.org/content/aem/79/1/105.full.pdf
    • Jer-Horng Wu, Mao-Hsuang Hsu, Ching-Hui Hung, I-Cheng Tseng, Tsair-Fuh Lin. Development of a Hierarchical Oligonucleotide Primer Extension Assay for the Qualitative and Quantitative Analysis of Cylindrospermopsis Raciborskii Subspecies in Freshwater. Microbes and Environments, 25 (2), 103-10. https://www.jstage.jst.go.jp/article/jsme2/25/2/25_ME09186/_article

    2009

    • Jer-Horng Wu, Peiying Hong, Wen-Tso Liu. Quantitative effects of position and type of single mismatch on single base primer extension. Journal of microbiological methods, 77 (3), 267-75. https://aem.asm.org/content/aem/79/1/105.full.pdf
    • Peiying Hong, Jer-Horng Wu, Wen-Tso Liu. A high-throughput and quantitative hierarchical oligonucleotide primer extension (HOPE)-based approach to identify sources of faecal contamination in water bodies. Environmental Microbiology, 11(7), 1672-81. https://www.jstage.jst.go.jp/article/jsme2/25/2/25_ME09186/_article
    • Takashi Narihiro, Takeshi Terada, Akiko Ohashi, Jer-Horng Wu, Wen-Tso Liu, Nobuo Araki, Yoichi Kamagata, Kazunori Nakamura, Yuji Sekiguchi. Quantitative Detection of Culturable Methanogenic Archaea Abundance in Anaerobic Treatment Systems Using the Sequence-Specific rRNA Cleavage Method. The ISME Journal, 3 (5), 522-35. https://www.nature.com/articles/ismej20094
    • Chia-Lung Chen, Jer-Horng Wu, I-Cheng Tseng, Teh-Ming Liang, Wen-Tso Liu. Characterization of Active Microbes in a Full-Scale Anaerobic Fluidized Bed Reactor Treating Phenolic Wastewater. Microbes and Environments. 24 (2), 144-53. https://www.jstage.jst.go.jp/article/jsme2/24/2/24_ME09109/_article

    2008

    • Peiying Hong, Jer-Horng Wu, Wen-Tso Liu. Relative Abundance of Bacteroides Spp. In Stools and Wastewaters as Determined by Hierarchical Oligonucleotide Primer Extension. Applied and Environmental Microbiology, 74 (9), 2882-93. https://aem.asm.org/content/74/9/2882.long
    • Chia-Lung Chen, Jer-Horng Wu, Wen-Tso Liu. Identification of important microbial populations in the mesophilic and thermophilic phenol-degrading methanogenic consortia. Water Research, 24 (8), 1963-1976.

    2007

    • Jer-Horng Wu, Wen-Tso Liu. Quantitative multiplexing analysis of PCR-amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction. Nucleic Acids Research, 35 (11), e82. https://aem.asm.org/content/74/9/2882.long
    • E Michelle Starke , James C Smoot, Jer-Horng Wu, Wen-Tso Liu, Darrell Chandler, David A Stahl. Saliva-based Diagnostics Using 16S rRNA Microarrays and Microfluidics. Annals of the New York Academy of Sciences, 1098, 345-61. https://nyaspubs.onlinelibrary.wiley.com/doi/full/10.1196/annals.1384.007
    • Wen-Tso Liu, Huiling Guo, Jer-Horng Wu. Effects of Target Length on the Hybridization Efficiency and Specificity of rRNA-Based Oligonucleotide Microarrays. Applied and Environmental Microbiology, 73, 73-82. https://aem.asm.org/content/73/1/73

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